A Genetic Algorithm to Analyze the Security of Quantum Cryptographic Protocols: Full source code for our GA to analyze quantum protocols. Includes the ability to write QKD protocols in a (relatively) easy to use language of our design. Tested on Linux.
n-Player Impartial Combinatorial Games with Random Players: Some notes and software we used to analyze the games.
On the Application of Quantum Decision Theory to Artificial Life: This is old work and old software. But it should still work. You may also be interested in my robot simulator: Simple Robot Sim 2010.
On the Emergent Behaviors of a Robot Controlled by a Real-Time Evolving Neural Network: Again, older work, but it should still run.
An Algorithm for Evolving Multiple Quantum Operators for Arbitrary Quantum Computational Problems: Source code.
Simulating Quantum Algorithms with Q-Prog.